96 snps from small fluidigm arrays Search Results


90
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fluidigm snptype genotyping reagent kit
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fluidigm ep1 snp genotyping 96 96 dynamic array
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TIB MOLBIOL virsnip sars-cov-2 spike e484a assay
Sensitivity and specificity of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike SNP assays with reference to whole genome sequencing.
Virsnip Sars Cov 2 Spike E484a Assay, supplied by TIB MOLBIOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Thermo Fisher snp ly96 c 28982107 10
Sensitivity and specificity of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike SNP assays with reference to whole genome sequencing.
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BIOTAGE psq hs 96 gold single-nucleotide polymorphism reagents
Sensitivity and specificity of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike SNP assays with reference to whole genome sequencing.
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FHB Inc snp marker wsnp_ex_c6400_11123059
Seventeen QTN for FHB incidence (INC), severity (SEV), index (IND), days to anthesis (DTA), and plant height (PLHT), their corresponding high-confidence candidate genes, physical locations (IWGSC RefSeq 1.0 and 2.1), limit of detection (LOD) scores, and explained percent phenotypic variances (R 2 ) detected by single-locus mixed linear model (MLM) and multi-locus random single-nucleotide polymorphism (SNP)–effect mixed linear model (mrMLM) genome-wide association study (GWAS) methods with 2015-2017 multi-environment (MET) datasets from the FHB nurseries at Morden (MDN) and Brandon (BDN) in Manitoba (MB) Canada.
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ATCC u2os atcc
Seventeen QTN for FHB incidence (INC), severity (SEV), index (IND), days to anthesis (DTA), and plant height (PLHT), their corresponding high-confidence candidate genes, physical locations (IWGSC RefSeq 1.0 and 2.1), limit of detection (LOD) scores, and explained percent phenotypic variances (R 2 ) detected by single-locus mixed linear model (MLM) and multi-locus random single-nucleotide polymorphism (SNP)–effect mixed linear model (mrMLM) genome-wide association study (GWAS) methods with 2015-2017 multi-environment (MET) datasets from the FHB nurseries at Morden (MDN) and Brandon (BDN) in Manitoba (MB) Canada.
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Image Search Results


Sensitivity and specificity of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike SNP assays with reference to whole genome sequencing.

Journal: Journal of Clinical Virology plus

Article Title: Detection of SARS-CoV-2 VOC-Omicron using commercial sample-to-answer real-time RT-PCR platforms and melting curve-based SNP assays

doi: 10.1016/j.jcvp.2022.100091

Figure Lengend Snippet: Sensitivity and specificity of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike SNP assays with reference to whole genome sequencing.

Article Snippet: To assess the SNP detection performances of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike E484A assay (Cat. No. 53-0829-96) and VirSNiP SARS-CoV-2 Spike S371L/S373P assay (Cat. No. 53-0827-96), 44 clinical specimens from 39 patients were tested.

Techniques: Sequencing

Representative melting peaks of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike S371L/S373P ( <xref ref-type=Fig. 1 A) and VirSNiP SARS-CoV-2 Spike E484A ( B) assays (1A) Correct melting peaks with Tm between 60-64°C were observed when Omicron specimens were tested with VirSNiP SARS-CoV-2 Spike S371L/S373P assay. (1B) Correct melting peaks with Tm >55°C were observed when Omicron specimens were tested with VirSNiP SARS-CoV-2 Spike E484A assay. " width="100%" height="100%">

Journal: Journal of Clinical Virology plus

Article Title: Detection of SARS-CoV-2 VOC-Omicron using commercial sample-to-answer real-time RT-PCR platforms and melting curve-based SNP assays

doi: 10.1016/j.jcvp.2022.100091

Figure Lengend Snippet: Representative melting peaks of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike S371L/S373P ( Fig. 1 A) and VirSNiP SARS-CoV-2 Spike E484A ( B) assays (1A) Correct melting peaks with Tm between 60-64°C were observed when Omicron specimens were tested with VirSNiP SARS-CoV-2 Spike S371L/S373P assay. (1B) Correct melting peaks with Tm >55°C were observed when Omicron specimens were tested with VirSNiP SARS-CoV-2 Spike E484A assay.

Article Snippet: To assess the SNP detection performances of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike E484A assay (Cat. No. 53-0829-96) and VirSNiP SARS-CoV-2 Spike S371L/S373P assay (Cat. No. 53-0827-96), 44 clinical specimens from 39 patients were tested.

Techniques:

Representative melting peaks of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike Spike E484K ( <xref ref-type=Fig. 2 A) and VirSNiP SARS-CoV-2 Spike N501Y ( B) assays (2A) An aberrant melting peak with Tm between 42-44°C was observed when Omicron specimen was tested. The shift of melting temperature of VOC-Omicron may possibly be due to the presence of E484A mutation. (2B) An ambiguous melting peak indicated by blue arrow with Tm within 54-55°C. " width="100%" height="100%">

Journal: Journal of Clinical Virology plus

Article Title: Detection of SARS-CoV-2 VOC-Omicron using commercial sample-to-answer real-time RT-PCR platforms and melting curve-based SNP assays

doi: 10.1016/j.jcvp.2022.100091

Figure Lengend Snippet: Representative melting peaks of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike Spike E484K ( Fig. 2 A) and VirSNiP SARS-CoV-2 Spike N501Y ( B) assays (2A) An aberrant melting peak with Tm between 42-44°C was observed when Omicron specimen was tested. The shift of melting temperature of VOC-Omicron may possibly be due to the presence of E484A mutation. (2B) An ambiguous melting peak indicated by blue arrow with Tm within 54-55°C.

Article Snippet: To assess the SNP detection performances of TIB MOLBIOL VirSNiP SARS-CoV-2 Spike E484A assay (Cat. No. 53-0829-96) and VirSNiP SARS-CoV-2 Spike S371L/S373P assay (Cat. No. 53-0827-96), 44 clinical specimens from 39 patients were tested.

Techniques: Mutagenesis

Seventeen QTN for FHB incidence (INC), severity (SEV), index (IND), days to anthesis (DTA), and plant height (PLHT), their corresponding high-confidence candidate genes, physical locations (IWGSC RefSeq 1.0 and 2.1), limit of detection (LOD) scores, and explained percent phenotypic variances (R 2 ) detected by single-locus mixed linear model (MLM) and multi-locus random single-nucleotide polymorphism (SNP)–effect mixed linear model (mrMLM) genome-wide association study (GWAS) methods with 2015-2017 multi-environment (MET) datasets from the FHB nurseries at Morden (MDN) and Brandon (BDN) in Manitoba (MB) Canada.

Journal: Frontiers in Plant Science

Article Title: Multi-locus genome-wide association study of fusarium head blight in relation to days to anthesis and plant height in a spring wheat association panel

doi: 10.3389/fpls.2023.1166282

Figure Lengend Snippet: Seventeen QTN for FHB incidence (INC), severity (SEV), index (IND), days to anthesis (DTA), and plant height (PLHT), their corresponding high-confidence candidate genes, physical locations (IWGSC RefSeq 1.0 and 2.1), limit of detection (LOD) scores, and explained percent phenotypic variances (R 2 ) detected by single-locus mixed linear model (MLM) and multi-locus random single-nucleotide polymorphism (SNP)–effect mixed linear model (mrMLM) genome-wide association study (GWAS) methods with 2015-2017 multi-environment (MET) datasets from the FHB nurseries at Morden (MDN) and Brandon (BDN) in Manitoba (MB) Canada.

Article Snippet: The second pleiotropic QTN2D_7-31-162-184 for FHB INC, SEV, and IND, represented by SNP marker wsnp_Ex_c6400_11123059 (located at 62.96 Mb) on chromosome 2D, co-locates with a ribosome biogenesis protein NSA2 homolog ( TraesCS2D02G113600 ).

Techniques: Genome Wide

Manhattan plots depicting a pleiotropic Quantitative Trait Nucleotide (QTN), QTN2D_7-31-162-184 for FHB Incidence (INC), Severity (SEV) and Index (IND) on chromosome 2D, represented by SNP marker wsnp_Ex_c6400_11123059 , coinciding with a Ribosome biogenesis protein ( TraesCS2D02G113600 ), detected from Morden 2015 (MDN15-1 dataset) ( top ) and Morden 2017 (MDN17 datasets) environments ( center and bottom ) by the multi-locus random SNP-effect Mixed Linear Model (MrMLM) method deployed on an association mapping panel of 192 predominantly Canadian bread wheats. The horizontal black dotted line denotes the significance threshold (LOD=3), while pink dots above the threshold line represent QTN detected by more than one of the six multi-locus methods.

Journal: Frontiers in Plant Science

Article Title: Multi-locus genome-wide association study of fusarium head blight in relation to days to anthesis and plant height in a spring wheat association panel

doi: 10.3389/fpls.2023.1166282

Figure Lengend Snippet: Manhattan plots depicting a pleiotropic Quantitative Trait Nucleotide (QTN), QTN2D_7-31-162-184 for FHB Incidence (INC), Severity (SEV) and Index (IND) on chromosome 2D, represented by SNP marker wsnp_Ex_c6400_11123059 , coinciding with a Ribosome biogenesis protein ( TraesCS2D02G113600 ), detected from Morden 2015 (MDN15-1 dataset) ( top ) and Morden 2017 (MDN17 datasets) environments ( center and bottom ) by the multi-locus random SNP-effect Mixed Linear Model (MrMLM) method deployed on an association mapping panel of 192 predominantly Canadian bread wheats. The horizontal black dotted line denotes the significance threshold (LOD=3), while pink dots above the threshold line represent QTN detected by more than one of the six multi-locus methods.

Article Snippet: The second pleiotropic QTN2D_7-31-162-184 for FHB INC, SEV, and IND, represented by SNP marker wsnp_Ex_c6400_11123059 (located at 62.96 Mb) on chromosome 2D, co-locates with a ribosome biogenesis protein NSA2 homolog ( TraesCS2D02G113600 ).

Techniques: Marker